IL_4WT8_026

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_026 not in the Motif Atlas

Homologous match to IL_5J7L_029

Geometric discrepancy: 0.1304

The information below is about IL_5J7L_029

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

4WT8|1|Ab|G|581
4WT8|1|Ab|U|582
*
4WT8|1|Ab|A|624
4WT8|1|Ab|U|625
4WT8|1|Ab|A|626
4WT8|1|Ab|C|627

Current chains

Chain Ab

RNA (1504-MER)

Nearby chains

Chain AH

30S ribosomal protein S8

Chain AR

30S ribosomal protein S17