IL_4WT8_034

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_034 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0955

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4WT8|1|Ab|C|763
4WT8|1|Ab|A|764
4WT8|1|Ab|A|765
4WT8|1|Ab|A|766
4WT8|1|Ab|C|767
*
4WT8|1|Ab|G|783
4WT8|1|Ab|G|784
4WT8|1|Ab|U|785
4WT8|1|Ab|A|786
4WT8|1|Ab|G|787

Current chains

Chain Ab

RNA (1504-MER)

Nearby chains

Chain AK

30S ribosomal protein S11

Chain C1

Large subunit ribosomal RNA; LSU rRNA