IL_4WT8_044

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

4WT8|1|Ab|C|1037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_044 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.09

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

4WT8|1|Ab|U|1035
4WT8|1|Ab|G|1036
4WT8|1|Ab|C|1037
4WT8|1|Ab|A|1038
4WT8|1|Ab|U|1039
*
4WT8|1|Ab|A|1186
4WT8|1|Ab|U|1187
4WT8|1|Ab|G|1188

Current chains

Chain Ab

RNA (1504-MER)

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14 type Z

Chain C2

Transfer RNA; tRNA