IL_4WT8_059

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_059 not in the Motif Atlas

Geometric match to IL_4LFB_062

Geometric discrepancy: 0.0835

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4WT8|1|Ab|C|1414
4WT8|1|Ab|G|1415
4WT8|1|Ab|A|1416
4WT8|1|Ab|A|1417
4WT8|1|Ab|G|1418
*
4WT8|1|Ab|C|1444
4WT8|1|Ab|G|1445
4WT8|1|Ab|A|1446
4WT8|1|Ab|G|1447

Current chains

Chain Ab

RNA (1504-MER)

Nearby chains

Chain AU

30S ribosomal protein S20

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain CS

50S ribosomal protein L19