IL_4WT8_079

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

4WT8|1|Bb|A|408

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_079 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.0993

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4WT8|1|Bb|G|405
4WT8|1|Bb|G|406
4WT8|1|Bb|A|407
4WT8|1|Bb|A|408
4WT8|1|Bb|G|409
4WT8|1|Bb|A|410
4WT8|1|Bb|A|411
4WT8|1|Bb|G|412
*
4WT8|1|Bb|U|423
4WT8|1|Bb|G|424
4WT8|1|Bb|U|425
4WT8|1|Bb|A|426
4WT8|1|Bb|A|427
4WT8|1|Bb|A|428
4WT8|1|Bb|C|429

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BD

30S ribosomal protein S4