IL_4WT8_080

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_080 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.1464

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4WT8|1|Bb|G|441
4WT8|1|Bb|G|442
4WT8|1|Bb|A|443
4WT8|1|Bb|C|444
4WT8|1|Bb|G|445
*
4WT8|1|Bb|C|468
4WT8|1|Bb|G|469
4WT8|1|Bb|G|470
4WT8|1|Bb|U|471
4WT8|1|Bb|A|472
4WT8|1|Bb|C|473

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BD

30S ribosomal protein S4

Chain BP

30S ribosomal protein S16