IL_4WT8_089

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_089 not in the Motif Atlas

Homologous match to IL_4LFB_027

Geometric discrepancy: 0.0668

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

4WT8|1|Bb|G|638
4WT8|1|Bb|A|639
*
4WT8|1|Bb|U|735
4WT8|1|Bb|G|736
4WT8|1|Bb|A|737
4WT8|1|Bb|C|738

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BH

30S ribosomal protein S8

Chain BO

30S ribosomal protein S15