IL_4WT8_100
3D structure
- PDB id
- 4WT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UGG*CACA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WT8_100 not in the Motif Atlas
- Geometric match to IL_4WF9_003
- Geometric discrepancy: 0.2845
- The information below is about IL_4WF9_003
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_90351.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
4WT8|1|Bb|U|930
4WT8|1|Bb|G|931
4WT8|1|Bb|G|932
*
4WT8|1|Bb|C|1208
4WT8|1|Bb|A|1209
4WT8|1|Bb|C|1210
4WT8|1|Bb|A|1211
Current chains
- Chain Bb
- RNA (1504-MER)
Nearby chains
- Chain BM
- 30S ribosomal protein S13
- Chain BT
- 30S ribosomal protein S19
- Chain D2
- tRNA (5'-D(*AP*UP*CP*CP*CP*CP*GP*UP*GP*UP*CP*CP*UP*UP*GP*GP*UP*UP*CP*G)-3')
- Chain D4
- Transfer RNA; tRNA
- Chain DV
- Transfer RNA; tRNA
Coloring options: