IL_4WT8_101

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_101 not in the Motif Atlas

Geometric match to IL_4LFB_039

Geometric discrepancy: 0.1545

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4WT8|1|Bb|G|971
4WT8|1|Bb|A|972
4WT8|1|Bb|C|973
4WT8|1|Bb|A|974
4WT8|1|Bb|U|975
*
4WT8|1|Bb|A|1027
4WT8|1|Bb|C|1028

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BN

30S ribosomal protein S14 type Z