IL_4WT8_119

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_119 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.1037

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4WT8|1|Bb|G|1399
4WT8|1|Bb|G|1400
4WT8|1|Bb|A|1401
4WT8|1|Bb|G|1402
*
4WT8|1|Bb|U|1459
4WT8|1|Bb|G|1460
4WT8|1|Bb|A|1461
4WT8|1|Bb|C|1462

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain D1

Large subunit ribosomal RNA; LSU rRNA