IL_4WT8_145

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

4WT8|1|C1|G|822, 4WT8|1|C1|A|834, 4WT8|1|C1|A|835, 4WT8|1|C1|C|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_145 not in the Motif Atlas

Geometric match to IL_7RQB_023

Geometric discrepancy: 0.0813

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

4WT8|1|C1|G|821
4WT8|1|C1|G|822
4WT8|1|C1|A|823
*
4WT8|1|C1|U|833
4WT8|1|C1|A|834
4WT8|1|C1|A|835
4WT8|1|C1|C|836
4WT8|1|C1|C|837

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C8

50S ribosomal protein L34

Chain CB

50S ribosomal protein L2

Chain CD

50S ribosomal protein L4

Chain CW

50S ribosomal protein L22