IL_4WT8_155

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

4WT8|1|C1|A|941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_155 not in the Motif Atlas

Geometric match to IL_4WF9_002

Geometric discrepancy: 0.2348

The information below is about IL_4WF9_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4WT8|1|C1|G|926
4WT8|1|C1|G|927
*
4WT8|1|C1|U|940
4WT8|1|C1|A|941
4WT8|1|C1|C|942

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C2

Transfer RNA; tRNA

Chain CZ

50S ribosomal protein L25