IL_4WT8_162

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

4WT8|1|C1|U|1186, 4WT8|1|C1|A|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_162 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.096

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4WT8|1|C1|C|1063
4WT8|1|C1|U|1064
4WT8|1|C1|A|1065
4WT8|1|C1|A|1066
4WT8|1|C1|G|1067
4WT8|1|C1|U|1068
4WT8|1|C1|G|1069
*
4WT8|1|C1|C|1184
4WT8|1|C1|U|1185
4WT8|1|C1|U|1186
4WT8|1|C1|A|1187
4WT8|1|C1|A|1188
4WT8|1|C1|G|1189

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C0

50S ribosomal protein L36

Chain CF

50S ribosomal protein L6

Chain CM

50S ribosomal protein L13