IL_4WT8_166

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

4WT8|1|C1|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_166 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.245

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4WT8|1|C1|C|1246
4WT8|1|C1|G|1247
4WT8|1|C1|A|1248
4WT8|1|C1|U|1249
4WT8|1|C1|G|1250
*
4WT8|1|C1|U|1285
4WT8|1|C1|A|1286
4WT8|1|C1|A|1287
4WT8|1|C1|G|1288

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain CD

50S ribosomal protein L4

Chain CO

50S ribosomal protein L15