IL_4WT8_198

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

4WT8|1|C1|C|2076, 4WT8|1|C1|C|2623, 4WT8|1|C1|U|2624

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_198 not in the Motif Atlas

Homologous match to IL_9DFE_079

Geometric discrepancy: 0.1315

The information below is about IL_9DFE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70335.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4WT8|1|C1|A|2075
4WT8|1|C1|C|2076
4WT8|1|C1|G|2077
4WT8|1|C1|A|2078
*
4WT8|1|C1|U|2622
4WT8|1|C1|C|2623
4WT8|1|C1|U|2624
4WT8|1|C1|A|2625
4WT8|1|C1|U|2626

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C6

50S ribosomal protein L32

Chain CC

50S ribosomal protein L3

Chain CW

50S ribosomal protein L22