IL_4WT8_206

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4WT8|1|C1|U|2153

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_206 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.3265

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4WT8|1|C1|C|2150
4WT8|1|C1|U|2151
4WT8|1|C1|G|2152
4WT8|1|C1|U|2153
4WT8|1|C1|G|2154
4WT8|1|C1|A|2155
4WT8|1|C1|A|2156
4WT8|1|C1|C|2157
*
4WT8|1|C1|G|2176
4WT8|1|C1|G|2177
4WT8|1|C1|G|2178
4WT8|1|C1|A|2179
4WT8|1|C1|G|2180

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain CA

50S ribosomal protein L1