IL_4WT8_212

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_212 not in the Motif Atlas

Geometric match to IL_7RQB_092

Geometric discrepancy: 0.0943

The information below is about IL_7RQB_092

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

4WT8|1|C1|G|2465
4WT8|1|C1|G|2466
*
4WT8|1|C1|C|2507
4WT8|1|C1|A|2508
4WT8|1|C1|C|2509

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain CC

50S ribosomal protein L3

Chain CP

50S ribosomal protein L16

Chain Ca

50S ribosomal protein L27