IL_4WT8_214

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

4WT8|1|C1|U|2502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_214 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.0928

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

4WT8|1|C1|A|2470
4WT8|1|C1|U|2471
4WT8|1|C1|C|2472
*
4WT8|1|C1|G|2500
4WT8|1|C1|G|2501
4WT8|1|C1|U|2502
4WT8|1|C1|U|2503
4WT8|1|C1|U|2504

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C2

Transfer RNA; tRNA

Chain CP

50S ribosomal protein L16

Chain Ca

50S ribosomal protein L27