IL_4WT8_217

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4WT8|1|C1|G|2587, 4WT8|1|C1|A|2588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_217 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.0694

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

4WT8|1|C1|C|2521
4WT8|1|C1|U|2522
4WT8|1|C1|C|2523
*
4WT8|1|C1|G|2585
4WT8|1|C1|C|2586
4WT8|1|C1|G|2587
4WT8|1|C1|A|2588
4WT8|1|C1|G|2589

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C6

50S ribosomal protein L32

Chain CC

50S ribosomal protein L3