IL_4WT8_226

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

4WT8|1|C1|A|2725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_226 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.0836

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4WT8|1|C1|C|2706
4WT8|1|C1|U|2707
*
4WT8|1|C1|A|2722
4WT8|1|C1|U|2723
4WT8|1|C1|A|2724
4WT8|1|C1|A|2725
4WT8|1|C1|G|2726

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain CQ

50S ribosomal protein L17

Chain CS

50S ribosomal protein L19