IL_4WT8_227

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4WT8|1|C1|A|2777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_227 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0731

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4WT8|1|C1|G|2749
4WT8|1|C1|A|2750
4WT8|1|C1|U|2751
4WT8|1|C1|A|2752
4WT8|1|C1|A|2753
4WT8|1|C1|C|2754
*
4WT8|1|C1|G|2774
4WT8|1|C1|G|2775
4WT8|1|C1|A|2776
4WT8|1|C1|A|2777
4WT8|1|C1|G|2778
4WT8|1|C1|C|2779

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C0

50S ribosomal protein L36

Chain CF

50S ribosomal protein L6

Chain CM

50S ribosomal protein L13