IL_4WT8_229

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGG*CCGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_229 not in the Motif Atlas

Homologous match to IL_7RQB_109

Geometric discrepancy: 0.0836

The information below is about IL_7RQB_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58764.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4WT8|1|C1|G|2852
4WT8|1|C1|G|2853
4WT8|1|C1|G|2854
4WT8|1|C1|G|2855
*
4WT8|1|C1|C|2879
4WT8|1|C1|C|2880
4WT8|1|C1|G|2881
4WT8|1|C1|A|2882
4WT8|1|C1|C|2883

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain CC

50S ribosomal protein L3

Chain CQ

50S ribosomal protein L17

Chain CS

50S ribosomal protein L19