IL_4WT8_247

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_247 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0682

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4WT8|1|D1|U|227
4WT8|1|D1|G|228
4WT8|1|D1|A|229
4WT8|1|D1|G|230
4WT8|1|D1|U|231
4WT8|1|D1|A|232
4WT8|1|D1|G|233
*
4WT8|1|D1|C|241
4WT8|1|D1|G|242
4WT8|1|D1|A|243
4WT8|1|D1|A|244
4WT8|1|D1|A|245
4WT8|1|D1|G|246

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain D9

50S ribosomal protein L35

Chain DO

50S ribosomal protein L15