IL_4WT8_258

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4WT8|1|D1|G|847, 4WT8|1|D1|G|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_258 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.0781

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4WT8|1|D1|G|720
4WT8|1|D1|A|721
4WT8|1|D1|A|722
4WT8|1|D1|A|723
4WT8|1|D1|C|724
*
4WT8|1|D1|G|845
4WT8|1|D1|A|846
4WT8|1|D1|G|847
4WT8|1|D1|A|848
4WT8|1|D1|U|849
4WT8|1|D1|A|850
4WT8|1|D1|G|851
4WT8|1|D1|C|852

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DD

50S ribosomal protein L4

Chain DO

50S ribosomal protein L15