3D structure

PDB id
4WT8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GCACU*AAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WT8_269 not in the Motif Atlas
Homologous match to IL_7RQB_029
Geometric discrepancy: 0.0968
The information below is about IL_7RQB_029
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_02509.1
Basepair signature
cWW-tSW-cWS-cSH-tWH-R-R-cWW
Number of instances in this motif group
5

Unit IDs

4WT8|1|D1|G|910
4WT8|1|D1|C|911
4WT8|1|D1|A|912
4WT8|1|D1|C|913
4WT8|1|D1|U|914
*
4WT8|1|D1|A|954
4WT8|1|D1|A|955
4WT8|1|D1|A|956
4WT8|1|D1|C|957

Current chains

Chain D1
23S rRNA (2899-MER)

Nearby chains

Chain DP
50S ribosomal protein L16
Chain DZ
50S ribosomal protein L25
Chain Ds
5S ribosomal RNA; 5S rRNA

Coloring options:


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