IL_4WT8_278

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_278 not in the Motif Atlas

Geometric match to IL_7RQB_037

Geometric discrepancy: 0.1249

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4WT8|1|D1|C|1049
4WT8|1|D1|C|1050
4WT8|1|D1|C|1051
4WT8|1|D1|C|1052
4WT8|1|D1|C|1053
4WT8|1|D1|A|1054
4WT8|1|D1|A|1055
4WT8|1|D1|G|1056
*
4WT8|1|D1|C|1195
4WT8|1|D1|G|1196

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DM

50S ribosomal protein L13

Chain DT

50S ribosomal protein L20