IL_4WT8_282

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4WT8|1|D1|U|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_282 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.1011

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

4WT8|1|D1|G|1076
4WT8|1|D1|A|1077
4WT8|1|D1|U|1078
4WT8|1|D1|G|1079
*
4WT8|1|D1|C|1166
4WT8|1|D1|G|1167
4WT8|1|D1|C|1168

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain D0

50S ribosomal protein L36

Chain DF

50S ribosomal protein L6

Chain DP

50S ribosomal protein L16