IL_4WT8_283

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

4WT8|1|D1|G|1293

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_283 not in the Motif Atlas

Homologous match to IL_7RQB_045

Geometric discrepancy: 0.1155

The information below is about IL_7RQB_045

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4WT8|1|D1|C|1240
4WT8|1|D1|G|1241
4WT8|1|D1|U|1242
*
4WT8|1|D1|A|1292
4WT8|1|D1|G|1293
4WT8|1|D1|U|1294
4WT8|1|D1|G|1295

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DD

50S ribosomal protein L4

Chain DO

50S ribosomal protein L15

Chain DT

50S ribosomal protein L20