IL_4WT8_313

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_313 not in the Motif Atlas

Geometric match to IL_7RQB_076

Geometric discrepancy: 0.0932

The information below is about IL_7RQB_076

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_59677.2

Basepair signature

cWW-cWW

Number of instances in this motif group

19

Unit IDs

4WT8|1|D1|G|1954
4WT8|1|D1|C|1955
*
4WT8|1|D1|G|1985
4WT8|1|D1|C|1986
4WT8|1|D1|A|1987
4WT8|1|D1|C|1988

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain D4

Transfer RNA; tRNA