IL_4WT8_317

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

4WT8|1|D1|U|2089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_317 not in the Motif Atlas

Homologous match to IL_7RQB_080

Geometric discrepancy: 0.0785

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

4WT8|1|D1|G|2088
4WT8|1|D1|U|2089
4WT8|1|D1|G|2090
*
4WT8|1|D1|C|2453
4WT8|1|D1|C|2454

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain DD

50S ribosomal protein L4

Chain DO

50S ribosomal protein L15