IL_4WT8_338

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4WT8|1|D1|A|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_338 not in the Motif Atlas

Homologous match to IL_7RQB_101

Geometric discrepancy: 0.5598

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

4WT8|1|D1|C|2602
4WT8|1|D1|G|2603
*
4WT8|1|D1|C|2612
4WT8|1|D1|A|2613
4WT8|1|D1|G|2614

Current chains

Chain D1

23S rRNA (2899-MER)

Nearby chains

Chain D4

Transfer RNA; tRNA

Chain DB

50S ribosomal protein L2

Chain DV

Transfer RNA; tRNA

Chain Da

50S ribosomal protein L27