IL_4WT8_351

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4WT8|1|Ds|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_351 not in the Motif Atlas

Homologous match to IL_4WF9_112

Geometric discrepancy: 0.1802

The information below is about IL_4WF9_112

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

4WT8|1|Ds|C|17
4WT8|1|Ds|G|18
*
4WT8|1|Ds|C|65
4WT8|1|Ds|A|66
4WT8|1|Ds|G|67

Current chains

Chain Ds

5S rRNA (119-MER)

Nearby chains

Chain D1

Large subunit ribosomal RNA; LSU rRNA

Chain DZ

50S ribosomal protein L25