IL_4WT8_356
3D structure
- PDB id
- 4WT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WT8_356 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.0761
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4WT8|1|Ds|C|71
4WT8|1|Ds|G|72
4WT8|1|Ds|A|73
4WT8|1|Ds|U|74
4WT8|1|Ds|G|75
4WT8|1|Ds|G|76
4WT8|1|Ds|U|77
4WT8|1|Ds|A|78
4WT8|1|Ds|C|79
*
4WT8|1|Ds|G|98
4WT8|1|Ds|G|99
4WT8|1|Ds|A|100
4WT8|1|Ds|G|101
4WT8|1|Ds|A|102
4WT8|1|Ds|G|103
4WT8|1|Ds|U|104
4WT8|1|Ds|A|105
4WT8|1|Ds|G|106
Current chains
- Chain Ds
- 5S rRNA (119-MER)
Nearby chains
- Chain D1
- Large subunit ribosomal RNA; LSU rRNA
- Chain DP
- 50S ribosomal protein L16
- Chain DZ
- 50S ribosomal protein L25
- Chain Da
- 50S ribosomal protein L27
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