IL_4WT8_364

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_364 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.0703

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4WT8|1|Bb|G|657
4WT8|1|Bb|G|658
4WT8|1|Bb|A|659
4WT8|1|Bb|A|660
4WT8|1|Bb|U|661
*
4WT8|1|Bb|G|697
4WT8|1|Bb|G|698
4WT8|1|Bb|A|699
4WT8|1|Bb|A|700
4WT8|1|Bb|C|701

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BF

30S ribosomal protein S6

Chain BK

30S ribosomal protein S11

Chain BS

30S ribosomal protein S18

Chain DB

50S ribosomal protein L2