IL_4WT8_373

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUCC*GGC

Length

7 nucleotides

Bulged bases

4WT8|1|C1|C|2413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WT8_373 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.3069

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4WT8|1|C1|G|2411
4WT8|1|C1|U|2412
4WT8|1|C1|C|2413
4WT8|1|C1|C|2414
*
4WT8|1|C1|G|2425
4WT8|1|C1|G|2426
4WT8|1|C1|C|2427

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain C7

50S ribosomal protein L33

Chain C9

50S ribosomal protein L35

Chain CH

50S ribosomal protein L28

Chain CO

50S ribosomal protein L15