IL_4WU1_047

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAGG*CCUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUAGG,CCUAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WU1_047 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2864

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4WU1|1|13|C|998|||A
4WU1|1|13|U|999
4WU1|1|13|A|1000
4WU1|1|13|G|1001
4WU1|1|13|G|1002
*
4WU1|1|13|C|1038
4WU1|1|13|C|1039
4WU1|1|13|U|1040
4WU1|1|13|A|1041
4WU1|1|13|G|1042

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA