IL_4WU1_056

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

4WU1|1|13|C|1129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WU1_056 not in the Motif Atlas

Geometric match to IL_1U9S_005

Geometric discrepancy: 0.2578

The information below is about IL_1U9S_005

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4WU1|1|13|C|1128
4WU1|1|13|C|1129
4WU1|1|13|A|1130
4WU1|1|13|G|1131
4WU1|1|13|C|1132
*
4WU1|1|13|G|1142
4WU1|1|13|G|1143

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 8E

30S ribosomal protein S9