IL_4WU1_065

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

4WU1|1|13|A|1493||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WU1_065 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2166

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4WU1|1|13|C|1407
4WU1|1|13|A|1408
4WU1|1|13|C|1409
*
4WU1|1|13|G|1491
4WU1|1|13|A|1492||A
4WU1|1|13|A|1493||A
4WU1|1|13|G|1494

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 3I

30S ribosomal protein S12

Chain 4K

mRNA