IL_4WU1_144

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4WU1|1|14|A|1938, 4WU1|1|14|U|1944, 4WU1|1|14|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WU1_144 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1084

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4WU1|1|14|C|1934
4WU1|1|14|G|1935
4WU1|1|14|A|1936
4WU1|1|14|A|1937
4WU1|1|14|A|1938
4WU1|1|14|U|1939
4WU1|1|14|U|1940
4WU1|1|14|C|1941
4WU1|1|14|C|1942
4WU1|1|14|U|1943
4WU1|1|14|U|1944
4WU1|1|14|G|1945
*
4WU1|1|14|C|1961
4WU1|1|14|C|1962
4WU1|1|14|U|1963
4WU1|1|14|G|1964

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA