3D structure

PDB id
4WU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UGG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4WU1_152 not in the Motif Atlas
Geometric match to IL_4P3U_012
Geometric discrepancy: 0.2181
The information below is about IL_4P3U_012
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

4WU1|1|14|U|2099
4WU1|1|14|G|2100
4WU1|1|14|G|2101
*
4WU1|1|14|C|2188
4WU1|1|14|U|2189
4WU1|1|14|G|2190

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 69
50S ribosomal protein L9

Coloring options:


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