IL_4WU1_344

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WU1_344 not in the Motif Atlas

Geometric match to IL_1NBS_006

Geometric discrepancy: 0.2337

The information below is about IL_1NBS_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4WU1|1|1H|C|2140
4WU1|1|1H|G|2141
4WU1|1|1H|C|2142
*
4WU1|1|1H|G|2149
4WU1|1|1H|U|2150
4WU1|1|1H|G|2151

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 2I

30S ribosomal protein S11

Chain 71

50S ribosomal protein L1