IL_4WU1_407

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4WU1|1|1H|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WU1_407 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1303

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4WU1|1|1H|C|844
4WU1|1|1H|G|845
4WU1|1|1H|C|846
4WU1|1|1H|U|847
4WU1|1|1H|G|848
4WU1|1|1H|A|849
4WU1|1|1H|C|850
*
4WU1|1|1H|G|928
4WU1|1|1H|G|929
4WU1|1|1H|U|930
4WU1|1|1H|G|931
4WU1|1|1H|G|932
4WU1|1|1H|A|933
4WU1|1|1H|G|934

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain L8

50S ribosomal protein L30