IL_4WU1_426

3D structure

PDB id

4WU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

4WU1|1|1H|G|2131, 4WU1|1|1H|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WU1_426 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.4498

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.1

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

23

Unit IDs

4WU1|1|1H|C|2129
4WU1|1|1H|U|2130
4WU1|1|1H|G|2131
4WU1|1|1H|U|2132
4WU1|1|1H|G|2133
4WU1|1|1H|A|2134
4WU1|1|1H|A|2135
4WU1|1|1H|C|2136
*
4WU1|1|1H|G|2155
4WU1|1|1H|G|2156
4WU1|1|1H|G|2157
4WU1|1|1H|A|2158
4WU1|1|1H|G|2159

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 71

50S ribosomal protein L1