IL_4WWW_080

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_080 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.24

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4WWW|1|RA|C|274
4WWW|1|RA|C|275
4WWW|1|RA|U|276
4WWW|1|RA|G|277
4WWW|1|RA|A|278
4WWW|1|RA|A|279
4WWW|1|RA|U|280
4WWW|1|RA|C|281
*
4WWW|1|RA|G|359
4WWW|1|RA|U|360
4WWW|1|RA|G|361
4WWW|1|RA|A|362
4WWW|1|RA|G|363

Current chains

Chain RA

23S rRNA

Nearby chains