IL_4WWW_137

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

4WWW|1|RA|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_137 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.0714

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4WWW|1|RA|U|1712
4WWW|1|RA|A|1713
4WWW|1|RA|U|1714
4WWW|1|RA|G|1715
4WWW|1|RA|U|1716
4WWW|1|RA|A|1717
4WWW|1|RA|G|1718
*
4WWW|1|RA|U|1742
4WWW|1|RA|G|1743
4WWW|1|RA|A|1744
4WWW|1|RA|A|1745
4WWW|1|RA|A|1746

Current chains

Chain RA

23S rRNA

Nearby chains