IL_4WWW_208

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

4WWW|1|XA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_208 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1631

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4WWW|1|XA|U|409
4WWW|1|XA|G|410
4WWW|1|XA|A|411
4WWW|1|XA|A|412
4WWW|1|XA|G|413
4WWW|1|XA|A|414
4WWW|1|XA|A|415
4WWW|1|XA|G|416
*
4WWW|1|XA|U|427
4WWW|1|XA|G|428
4WWW|1|XA|U|429
4WWW|1|XA|A|430
4WWW|1|XA|A|431
4WWW|1|XA|A|432
4WWW|1|XA|G|433

Current chains

Chain XA

16S rRNA

Nearby chains

Chain QK

30S ribosomal protein S11

Chain RA

Large subunit ribosomal RNA; LSU rRNA

Chain XD

30S ribosomal protein S4