IL_4WWW_273

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_273 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.1123

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4WWW|1|YA|G|536
4WWW|1|YA|G|537
4WWW|1|YA|A|538
4WWW|1|YA|G|539
*
4WWW|1|YA|U|554
4WWW|1|YA|G|555
4WWW|1|YA|A|556
4WWW|1|YA|C|557

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YJ

50S ribosomal protein L13

Chain YQ

50S ribosomal protein L20