IL_4WWW_303

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

4WWW|1|YA|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_303 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.3177

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

4WWW|1|YA|G|1202
4WWW|1|YA|U|1203
4WWW|1|YA|A|1204
4WWW|1|YA|A|1205
4WWW|1|YA|G|1206
*
4WWW|1|YA|U|1240
4WWW|1|YA|A|1241
4WWW|1|YA|U|1242
4WWW|1|YA|C|1243

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L4

Chain YL

50S ribosomal protein L15

Chain YQ

50S ribosomal protein L20