IL_4WWW_306

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGG,CCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_306 not in the Motif Atlas

Geometric match to IL_5MWI_006

Geometric discrepancy: 0.2014

The information below is about IL_5MWI_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

4WWW|1|YA|G|1279
4WWW|1|YA|G|1280
4WWW|1|YA|G|1281
*
4WWW|1|YA|C|1289
4WWW|1|YA|C|1290
4WWW|1|YA|C|1291

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y0

50S ribosomal protein L32

Chain YN

50S ribosomal protein L17