IL_4WWW_320

3D structure

PDB id

4WWW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

4WWW|1|YA|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WWW_320 not in the Motif Atlas

Homologous match to IL_5J7L_302

Geometric discrepancy: 0.3368

The information below is about IL_5J7L_302

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

4WWW|1|YA|C|1489
4WWW|1|YA|A|1490
4WWW|1|YA|G|1491
*
4WWW|1|YA|C|1499
4WWW|1|YA|G|1500

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YC

50S ribosomal protein L2